rs38232535 SNP Detail

Summary

• ID
  rs38232535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126911796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGGAAG AAGACATTAG
  GGGAGATGGG AAAAGACATG GGGGGGTATT ATTATTCCTT TTCCCAAAGC CCAACTCTGA
  ACAGAGTACG GGTCACTGTG GGACTGACCT TCTTGGCAGC AGAGAGTGGA CACACACTGG
  GGAGACAGAC CCGATAGATG GAGTCCCTGT CTGAGGAGTC TAGAACAGGA AGCTGTCGGG
  R
  CAGAAGGTTC TGGGACTCGG TAACGTGTTC ATTCCCAGGA CCCACTAAAG ATCAGTGACC
  TCTTGTTCTC CAGCTGTAGA GAAGCACACA CACACACACA CACATACACA CACACACACA
  CACACGGGGG GGGGGGGGGA TACACCACAA AGGATGTCAG GTTCCCAGAC ACACTAACCC
  TTAAGACTCC ACACTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50942011	NES14261660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38232535					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942011	NES14261660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126911796 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	within coordinates
Rr213500	regulatory region 213500	596 bp distal
Rr224393	regulatory region 224393	within coordinates
Rr224394	regulatory region 224394	1204 bp proximal
Tssr96119	transcription start site region 96119	602 bp downstream
Tssr96120	transcription start site region 96120	529 bp downstream