rs38232540 SNP Detail

Summary

• ID
  rs38232540
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127386822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTAAGAC TTGGCTTCTG CGTGTGGGCA TAGAGAGCCA
  GGATTGGACC CTGCCTGGTG ACTGCCACTC ACAGCACACT GTCCCCTGTA CCTGGTATGC
  M
  CAGAGACTTG CATTTTGTGC ACCTTACAGA CCCTTGCCTG AGCATCCCTT TGTCCCAGCA
  GCTTCGGGCC ACTGTGGGCT TTCTAAGGAC CGTTAGCTTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51358132	NES14484422	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38232540					SNP	C	C	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51358132	NES14484422	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127386822 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr396245	regulatory region 396245	within coordinates