rs38233137 SNP Detail

Summary

• ID
  rs38233137
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15779999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGGAGG GGCATTCAAA
  AGCTTCCTGC ATTCAGAGAC ACTTGTCTGT GCACTGAGGA TCAAATGCCA AGTCTTTTTG
  CATCCTGGAT CCTGAAACAA GCAACTCCCC TATTCCTGAC AACAAATGCT TCGGCTGCCT
  TTTATTTCAT TCTGTTCTAC ATACATGAAG GACATGATTG CCTCCCTGGT TTCCAGTTTT
  W
  AAAAAATCCT GATTTGATTA GCGTTTGTGT AGAGATGGAC GATCATATAC AACCAGTCCA
  TCGCAATATG TTGGGTTTGG TTTGTGACTC TCAATCAGGG TGACTGGCAT GACATCCAAG
  AGTCTTTGTT ATCATATTGG AACATTTTGG ATTGACACAA CTTGACAAGG TGTTGAGCGT
  TCTACAGCAT TCAGGAGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640792	NES13617950	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38233137					SNP	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640792	NES13617950	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15779999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	382 bp distal
Gm50348	predicted gene, 50348	423 bp upstream
Gm54054	predicted gene, 54054	124 bp upstream
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	189 bp distal
Rr544632	regulatory region 544632	577 bp distal
Rr544633	regulatory region 544633	within coordinates
Rr544634	regulatory region 544634	434 bp proximal