rs38234452 SNP Detail

Summary

• ID
  rs38234452
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15782902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCGTGCA TCTGTGCTCG
  ATCCTAAAAC ATTCTCCTTC TGTTCACACT CCCACTGGTC CTGACCAGCT CACACTCTTC
  CTCCATCTTG CCCTGTTCCT GATCGTCCCT CAAAGCCAGA AGCCAGGCCA ACCATAGCTG
  GCCTCCACTG CTCCTAGTAG GTCTTCTCTT ACACACCTCT CACAGGCTTC CTCTAAATGG
  W
  CTCCCTCTTC ACATCTATGG GCTGGCCCCC CTCATGTCCT TCCCCCATCC ATGGGATACC
  CACCTACTTC CTCTTAGGCT TTGTCTTCAC CATTTTGGAA TATATAAGGA ATAGACGTAT
  TTTTTGTGCT TTTAGGGGGA TGCATTGGCT CGTCCTTTTT TCATTGACAT CTTGATGACA
  AGTACAGCCA CTGGCTGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640766	NES13617902	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38234452					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640766	NES13617902	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15782902 () rs orientation: forward

Symbol	Name	Function Class
Gm50348	predicted gene, 50348	within coordinates
Rr406864	regulatory region 406864	870 bp distal
Rr544634	regulatory region 544634	1654 bp distal