rs38234852 SNP Detail

Summary

• ID
  rs38234852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32575151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAAAGGC ATTTGCCACC
  AATCCTGCCA ATGTGAGTTC AGTCCCTGGA ATCCAAATGT TGGAAGGAGA AAATTGACTC
  CTGCAAGTTG TCCTTTGAAG ACTATACACA CACACACACA CACACACACA CACACACACA
  CACACACAAA TAAATGTTTT AAAAAATAAC AGCATCTCAC AGTCTGCTTC AAGTGCTAGA
  R
  TTAGACATGC ATCACCACGC CCACTTTTAT TGAGTCTCTT ATTAATCATT TCAAGTTGGT
  CAAACACAGG AATCAGAGGC CCCTGAGATG CAACTGACTT GAATACCTCC TCACTGAGGA
  CTACATTTTA TGGTGCCAGA AGGTTCCATG CAAGCTTCCA CAGGAGAAAA GCAACCAACA
  GGCCTTCCTG GATTAGTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51692612	NES14755971	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38234852					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51692612	NES14755971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32575151 () rs orientation: forward

Symbol	Name	Function Class
D5Mit334	DNA segment, Chr 5, Massachusetts Institute of Technology 334	8 bp distal
Rr609358	regulatory region 609358	500 bp distal