rs38235553 SNP Detail

Summary

• ID
  rs38235553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127722707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAAAA AACTGTCTAG
  AACCCTCAGA CTCTCCAAAA GTCACCCTGT GACAATCTGC CAAGCCCCAT GACTGGCAGG
  GCTAACCTGT CCTTTGCTCT AGGACTAAAG GTACTAAAGG CACTCTGCAA ACAGTCACAC
  TGGGCCCAGG CTGTTAATAT TTTATTACCC ATAATGCCCT GTTCTCATGT TTAATCCTTA
  Y
  CTCAGAGCCC TGCTGCAAAG CCCTCCAGAA ATCTGACAAA CAACATGGTC ACTACTGCTA
  ATAATCTCTC AGTCTTGGCC ACACTCTCCT CTCCTCTTTC AATCGGTTGT TGGGATTTTT
  GTTGCTGCTG CTGTTGGGTT TTTTATTTGT TTATTAGGGT AAAAAAAAAA ATCTCTTTGT
  CATGCGAGAG TGTGGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50946005	NES14148137	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38235553					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50946005	NES14148137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127722707 () rs orientation: forward

Symbol	Name	Function Class
Rdh7	retinol dehydrogenase 7	within coordinates
Rr218503	regulatory region 218503	1707 bp distal
Rr226506	regulatory region 226506	within coordinates
Rr226507	regulatory region 226507	1685 bp proximal
Tssr99825	transcription start site region 99825	1604 bp upstream
Tssr99826	transcription start site region 99826	1806 bp downstream
Tssr99827	transcription start site region 99827	1850 bp downstream