rs38236830 SNP Detail

Summary

• ID
  rs38236830
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39570047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGCGGG AGAGAGGCGT
  TAACTAAGAC CCGAGTGATA AGAATCCAGT CCCGCACAGT CTCCCGGACT GAGCCTTCCA
  AGCAGCTGGC TAGTGGAGGT CCCGAGCGCA TGGAGACGGG TGGAGATGGG CTCAGAGACA
  AGACGGGTCC AGGCAGGGCA GACACGGAGA CCTTGAGTCA GTAAGGTAGT ATAGTCTGTT
  M
  TTTTCACCAT TAGGTACATT TTTACGATTA AAATTTGGCA CTTTTTTTGA GCCTCACTGT
  GTAGCCTCGA CTGACCTGGA ACTCATTAGT GATCCTCCTG TCTCTGCTTT CGGAGTGCTG
  GGATTAAAGG CGTGCGCCCC CAAGTCAGTG TTTAGATTTG GCACTTTAAA TCCTAGATTG
  GATGCTGTGT CTTACTCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616929	NES14842198	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38236830					SNP	C	C	C	C	C	C	A	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616929	NES14842198	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39570047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17326	CpG island 17326	14 bp distal
Gm16272	predicted gene 16272	293 bp upstream
Gm42420	predicted gene, 42420	within coordinates
Ndufb2	NADH:ubiquinone oxidoreductase subunit B2	within coordinates
Rr146179	regulatory region 146179	within coordinates
Tssr55732	transcription start site region 55732	525 bp downstream
Tssr55733	transcription start site region 55733	496 bp downstream
Tssr60497	transcription start site region 60497	559 bp upstream