rs38237145 SNP Detail

Summary

• ID
  rs38237145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60215791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCACAGT TCTGTATTAA
  AGAGAGAGGA TCAGGCCAGG AGCAGGAGGC TACTGTGACC CGGTGGGGAA GGAAACTCCA
  GGAAACAGCA TTTTCTTTCA AGTCTGAGGC CTGGATCTCG GGTGGAGAAG AGCACCAGGA
  ACGGGAAGAG AGAAGGGTCA CTGTGGGTGT GACCACCAGC CCCAGGAAGA TCATAGGCCA
  Y
  AGAGACTACA CACACGGCTA CATTCACTGC CAGGGGCAGG TTGGGAGGTA GCCTGGGTTT
  TAAGAACTGC TTCAAGCTGC TCTACTCACC CCAGGCCAGT CCTCACCATC CTTTTGAGGG
  CCGTGATTTC TGGATCCCAT AGCTGACAGC CTTTTGGTAT GCACAGTGCT CATGGTCCTT
  AGGGACCCTT TCCATCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866364	NES14170643	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss323325230	CHEV_10_59842760	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38237145					SNP	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866364	NES14170643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60215791 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm56993	predicted gene, 56993	1994 bp upstream
Rr368996	regulatory region 368996	1197 bp upstream
Rr432129	regulatory region 432129	56 bp proximal
Rr432130	regulatory region 432130	1004 bp proximal
Tssr93630	transcription start site region 93630	575 bp upstream
Tssr93631	transcription start site region 93631	634 bp upstream
Tssr97724	transcription start site region 97724	210 bp downstream