rs38237205 SNP Detail

Summary

• ID
  rs38237205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135250902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCAGACA GCAGTTCCTG GCTTCTTTGC TGTGGAGCTT
  GCGGGGAGGC AGAGTGCGGT GGCAGCAGGA GCTGCTCTCT TCATGACTGC CAGGAAGCAG
  R
  AAGAGGTCAA GGGACCTGTA ATCAGGTAGA ACTTTTAAAA GCTTACCCCC GGTGATCCAC
  TTCCTCCAGC TAGGCCCCAT GTCCTGAAGT TTCTAAAACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss51380656	NES14469635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs38237205					SNP	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380656	NES14469635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135250902 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	1649 bp upstream
Rr12584	regulatory region 12584	1499 bp proximal
Rr28593	regulatory region 28593	1298 bp proximal
Tssr8958	transcription start site region 8958	1606 bp upstream
Tssr8959	transcription start site region 8959	1658 bp upstream