rs38238826 SNP Detail

Summary

• ID
  rs38238826
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60937931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGGGGAAG AGAGCTGCCT GCCATCCCAA AAGCTGCTCA
  CAGAGATGGA GTTCCTGGTC CATGTGTTAC ATGGTTGCCA CAGCCATCCA GATAGCCCTG
  K
  GCTCCTCTCC CGGTCCCTAA ATGACCTCAG CCTTACACTC CCAACCCCCC CCCCCAAAAA
  AAAACCAAAC AGGGTTAGAA TTTGCTTGCC TTCTTGCCTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50416942	NES13460522	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38238826					SNP	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416942	NES13460522	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60937931 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	618 bp distal
Rr405669	regulatory region 405669	1011 bp downstream
Rr405670	regulatory region 405670	within coordinates
Rr405671	regulatory region 405671	797 bp upstream
Rr405672	regulatory region 405672	1653 bp upstream
Tssr151326	transcription start site region 151326	1003 bp downstream
Tssr151327	transcription start site region 151327	991 bp downstream
Tssr151328	transcription start site region 151328	147 bp upstream
Tssr151329	transcription start site region 151329	219 bp upstream
Tssr151330	transcription start site region 151330	1083 bp upstream
Tssr151331	transcription start site region 151331	1119 bp upstream
Tssr153492	transcription start site region 153492	845 bp upstream