rs38240025 SNP Detail

Summary

• ID
  rs38240025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24217315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCAGAG TCAAGGGGAG
  TGTAGGAGGT GAGATAGTGT GAAACCAAGC CAGAAATGTG TTTATTCGCA GAGTTCCTAG
  GTGAGCTTTC AAAATGGAAA TAAAGGCAGG AGTATGCCTT GGGATTTGGT TGTCTCTGTC
  AGCCAGATTT GGCAGGTTTA AAAATATGAA ACTAGTTCCA TCTGAAGAGG TTCCTGTTTG
  R
  GTCATTTCTC TCTCTTTTCT TCAGGAAAAT CTCAGTTTTC TTCTGTGTGT GCAGTTGTCT
  GGGACCCTGG GTATCCGCAA CTCTTAAGCG TCGTGCAAGT AAGAGCCATG GTTTATGGGG
  TGATGAGGCA GGGCTGTGGC TGAGTGAAGA CGGTGCTTCC AACGGTCCTT CATGCCTTCC
  CTCTTGGATT TGCATTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50928103	NES13475623	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38240025					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928103	NES13475623	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24217315 () rs orientation: forward

Symbol	Name	Function Class
Col9a1	collagen, type IX, alpha 1	within coordinates
Rr408588	regulatory region 408588	1733 bp proximal
Tssr21	transcription start site region 21	578 bp downstream
Tssr6103	transcription start site region 6103	523 bp downstream