rs38240234 SNP Detail

Summary

• ID
  rs38240234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87824478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCAAAA TTATGCCCAT
  ACAAATTCTT TTTCAATATA CTAAAAGACA CTTATTTTTC TTCCTTAGCA ACTTCTCCTG
  GCCCAGGTAA AATATTTTAC TAGATCAAAA TTATTTTAAT TTATCTCAAA TACATAGTCT
  ATGTCAATCA ATATACTAAA AGGAGACTTA TTTTTTCTTT TTTAGCAACC TTCCCTGGCA
  Y
  TGGTAAGATA TTTTTAACTA AATCTAAATT ATTTTAATTT ATCTCAAATA TGATACCAAT
  GCAAATTCAT GCCAGTCAAT ATACTGAAGT ACTAAAGGCA GCTTATTTTT CTTTTATAGC
  AAGTTTCCCC AGCACAGGTA AGACTCTTTT TGATTAAATC TAAATTATTT TAATTTCTCT
  CAAATGCTAT GCTAGTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51175034	NES13826349	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38240234					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51175034	NES13826349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87824478 () rs orientation: forward

Symbol	Name	Function Class
Csn1s1	casein alpha s1	within coordinates
Tssr46873	transcription start site region 46873	1589 bp downstream
Tssr46874	transcription start site region 46874	410 bp upstream
Tssr46875	transcription start site region 46875	969 bp upstream
Tssr46876	transcription start site region 46876	1234 bp upstream
Tssr46877	transcription start site region 46877	1397 bp upstream
Tssr51608	transcription start site region 51608	1557 bp upstream
Tssr51609	transcription start site region 51609	1448 bp downstream