rs38242165 SNP Detail

Summary

• ID
  rs38242165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19916211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAACTGG GCCTAGATTA
  TGGCACATTT CCATGGCTTA ACTGGGTCCC TCCTGAGGCA GAGGAGAACG TTTGGAGAAA
  GACAAGTAGC TCTGCTGTTA AGCCACTGCT TTAACAATGG AACAGGTAAT TAAACTTCAC
  TCTAGCTATA AAAAAAACAT TGAATGATGC CTCTTTTCAA GAACTAACTT GGATTGCATA
  Y
  ATATAAAAAA TTGAAATCAT GACATTTGAC ATTTGCAGGA AAAGACTCAG AAAGACATAA
  CCAGCAAGTA GATCCTAGAC ACAAAATAAT CTATGTACAT ACATACACCT ATGTGTTGGC
  ATGTAGATCT GTGTGCATGC TAAGACTGGA AATTGGGAAA AGAGAGCATG ACAGAAAAGA
  AAGAGATCTT AAAAGAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51072343	NES14365042	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38242165					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072343	NES14365042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19916211 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	within coordinates
Tssr121608	transcription start site region 121608	689 bp downstream
Tssr121609	transcription start site region 121609	759 bp downstream
Tssr121610	transcription start site region 121610	888 bp downstream