rs38244082 SNP Detail

Summary

• ID
  rs38244082
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49315539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATGATC CTAGATGTTT
  AGAAAACAAC GATTCCATAT TCATAATGCA TGAGATAGTT GTAAGCTAAT ATAAACCACC
  TTCAATCACT TTGATTTTTA TGTTAGAAAC CTGCTGTATT ATGCAGAAGG CAAAATCTGT
  TGAAACTCTG CATTTCATTA TTTGTGGATA ATTCAATACA TGTAGAATAC AATGACAATC
  K
  GGTTGCTATT CACCACAAGC CATTTTTCAG CTTATAAATG AAATCTTAAT TTTACAAAAT
  GTTTCCATCT ACCTTTGACT CATGTAGCAG GACAAGAATA TGAAACACAA GAAAAATTAC
  TTTTGAAAAG AAATGTTATA GCTACTTTGG CTTCTATCCA ACAAAGGTCC ATTTCTGACA
  TGGGTGGTTT TGAGAACTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51106706	NES13870519	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38244082					SNP	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106706	NES13870519	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49315539 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	within coordinates
Tssr50938	transcription start site region 50938	1175 bp downstream