rs38245575 SNP Detail

Summary

• ID
  rs38245575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC ACACTGTAAA AGAATCCACT
  Y
  CTTAGCTGAC CCTCTTCAGA GAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss52036454	NES15053652	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T		C
ss323074142	CHEV_9_92435908	CHEVERUD	SCREENING_POP	f	SNP					C		T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs38245575					SNP	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036454	NES15053652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423123 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	787 bp proximal
Gm37545	predicted gene, 37545	987 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1153 bp upstream
Rr684632	regulatory region 684632	663 bp proximal
Rr684633	regulatory region 684633	1848 bp proximal
Rr684634	regulatory region 684634	1975 bp proximal
Tssr86520	transcription start site region 86520	1185 bp upstream
Tssr86521	transcription start site region 86521	1360 bp upstream