rs38247070 SNP Detail

Summary

• ID
  rs38247070
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65939551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGGGTA TCCGTCAGGC
  AGGGCATCTG AGGCCATATT GAGAGAGCAG GCAGCAGCTG AAGGGGTTAT GCATAGCAGA
  GGTGGCCAGA TGACACTGAA AGCAAGCATA AATGTGGAGT GGATTAGAAG ACCTGTAGGA
  GGCTCTTACC CAGCGGGGCT CTGTGAATGA CTTTGATGAG ACTTATAGCC ATGAGATTAC
  K
  TTGGCCATTA GAAAAGGTAA AGTCAGCTGT GACTTGAAGC ATTTCGGTTA CCTTTAAAGA
  TTCACTTAAT TCCAGCACTG GGAGGAGTTA GCCTGATGGT ACTGATGGCA GCATTTGGAG
  GTTCAGGTGG AGGAGGAGGA ACTGTCAGGA GGATAAGGTA TCCAGAGAGT GGATGGAGTT
  TCTACCTGGA GCAGTGGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50440830	NES13452762	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38247070					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50440830	NES13452762	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65939551 () rs orientation: forward

Symbol	Name	Function Class
Rr539619	regulatory region 539619	297 bp distal
Sec11c	SEC11 homolog C, signal peptidase complex subunit	within coordinates
Tssr151702	transcription start site region 151702	343 bp downstream