rs38248172 SNP Detail

Summary

• ID
  rs38248172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68600652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTTAAG AGAGCTGGCT
  GCTCTTCCAG AGGTCCAGAG TTTCCACACC CTCATGGTGG CTCACAATCA TGGTAACTCT
  GATCATAGGG AACCTGTCGT TTTCTCTGTG CCTCTGTGGG CACTGAGCAC ATGCCACACA
  GACATCCATG CAGGCAGAAC ACTCTTGGCC ATGAAACCTT AAAATGAAGG AGAAACCTTA
  S
  GAGAGGTTCC CTAAGGAATC CCTGCAGAAG GGAGAGATTG TTTTCCTAAG ATGAGGTTTG
  GTGTGGAGGG GATGAGGTAT TCAAAGTTAA CTAGCCGCTC CTCACTCCTC TGCTGCCAAA
  TACCAGCACT GGGCTTCGAG ACACAATAGA ATTCGACCTT GTTTTCGTTT GGGTCACTAT
  TGCTCTCTAG TTGAACACGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss51541943	NES14683612	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs38248172					SNP	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541943	NES14683612	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68600652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	1869 bp distal
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	1957 bp distal
Rr578060	regulatory region 578060	within coordinates
Tssr29479	transcription start site region 29479	1956 bp downstream
Tssr29480	transcription start site region 29480	1949 bp downstream
Tssr29481	transcription start site region 29481	1908 bp downstream
Tssr29482	transcription start site region 29482	1881 bp downstream
Tssr29483	transcription start site region 29483	1808 bp downstream
Tssr29484	transcription start site region 29484	1669 bp downstream
Tssr29485	transcription start site region 29485	1384 bp downstream
Tssr29486	transcription start site region 29486	1362 bp downstream
Tssr29487	transcription start site region 29487	1250 bp downstream
Tssr29488	transcription start site region 29488	1232 bp downstream
Tssr29489	transcription start site region 29489	374 bp upstream
Tssr29490	transcription start site region 29490	420 bp upstream
Tssr29491	transcription start site region 29491	711 bp upstream
Tssr29492	transcription start site region 29492	759 bp upstream
Tssr29493	transcription start site region 29493	776 bp upstream
Tssr33509	transcription start site region 33509	1106 bp upstream