rs38248709 SNP Detail

Summary

• ID
  rs38248709
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4249436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCACATT CCCCTTGCCA
  CGCTGTGTCT TGATACTGAC TGGTGGGCTG TGCAGCAGCC CTCCTAGACT CCAGCCTCCT
  TGCCCAGGTT CTTTTGGCCC AAAGTCTAGA GCCCTGGCAA TTAGGAAGAA GCCACCAGAA
  GGGGGAATAC TACCAGAAGA ATGAGAGGTC AGAGTGCTTT GAACTCTATA ACACAGGGTC
  M
  AGGACAGGCC TTCAGGGTTT TCCAGGTCAT ACAAGAGAGC TGCAGGCAGG TCATAGGCTC
  TCTAGAAAAG CAGTTGGAGC AGGCCTCTGG GATACAGATG GCAGGACCCC ACAGTCAGTG
  GAAATGACAG AGAGGCAGCA GCTCCTGCTT TTGAAGAGCA AGGTAAGGGT CCAAATATGT
  ACTGAGTTGT GTGGCCTCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585412	NES13654367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38248709					SNP	C	C	C	C	C	C	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585412	NES13654367	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4249436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	1790 bp proximal
Rad9a	RAD9 checkpoint clamp component A	within coordinates
Tssr157469	transcription start site region 157469	1938 bp downstream