rs38248897 SNP Detail

Summary

• ID
  rs38248897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122361758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTACAGTT ATCTATTGTA
  AAAAAAAAAA AAAAAATGCT AGCTAAGAGC CAATCACTTG GAAACCTGAA CATTTAAAAA
  GTTCATCTTA TACTGCAAAG TCTTTCAATC GAGCATATCA AGTAAACAAG ACTATAGTGT
  CTATGTGGAC ACCTTGTTTA TGTATAACAG AACCTTTTAA AAAATCCACA TTATAAAGGA
  Y
  CTTAGGGAAT TTTAAGTAAA CAGTATGCAG TATGTTTTCT AAGTCTGTTC TATAAGGTTT
  TCTTTTTCTT CTGCAGTTAG AAGCGTACAG AATTACTGGA CTACTGAGTT AGAAGAAATA
  CTTCCTATAA AGTAGTCATT GCTCTTCTGT ATTCATATGT TAAAAAAAGG AGGGCCAGAG
  AAATCCAGTC CATTAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51614405	NES14662950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38248897					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51614405	NES14662950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122361758 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr74164	regulatory region 74164	324 bp proximal
Rr78947	regulatory region 78947	1158 bp distal
Rr375679	regulatory region 375679	1967 bp downstream
Tssr31506	transcription start site region 31506	1370 bp downstream
Tssr35455	transcription start site region 35455	676 bp downstream
Tssr35456	transcription start site region 35456	1601 bp downstream