rs38250895 SNP Detail

Summary

• ID
  rs38250895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGACCAT TTATTTTATC
  ACACCCCATT TTATTTTGAC CTTTAAATAG GTAAATGTTC ACTTGGAGGA ATCTCATCAG
  GATAACGAGT TGGATTAAGC ATGGTATTGG CTCTGTAAGA ATGAATCCTG GAGAGGAGAC
  ATGTACAGGA CTATATGCAG TGAGTGAGGG GAGAGGAGGC ATGGAAGAGA CTTTCTGAAA
  Y
  ATAAAATCTA CAGTCCTGCA GTTGTTGGAA AGATGTGACC TGTGGAGCCT AGCACACACA
  AAGCTGTGGG CTGGATCTGG AGCAGAGAAC TCCAGTATGG TGGCACACGC CTGTAATCCT
  AGAACTTGAG AGGTGGAGGT AGGAGGCTCA GAAGTTCAGT CATCCTTGGC TACACAGTGC
  ATTGGAGGCC ATCTTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354489	NES13746106	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38250895					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354489	NES13746106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	447 bp distal
Dguok	deoxyguanosine kinase	928 bp upstream
Rr399724	regulatory region 399724	655 bp downstream
Rr632884	regulatory region 632884	1976 bp distal
Rr632885	regulatory region 632885	374 bp distal
Rr632886	regulatory region 632886	1703 bp proximal
Tssr1908	transcription start site region 1908	727 bp downstream
Tssr61663	transcription start site region 61663	1573 bp upstream
Tssr61664	transcription start site region 61664	1010 bp upstream
Tssr61665	transcription start site region 61665	998 bp upstream
Tssr61666	transcription start site region 61666	983 bp upstream
Tssr61667	transcription start site region 61667	957 bp upstream
Tssr61668	transcription start site region 61668	939 bp upstream
Tssr61669	transcription start site region 61669	906 bp upstream