rs38253051 SNP Detail

Summary

• ID
  rs38253051
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35287734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGACAG AAAGGATTCT
  GTGAGCCACA GGGAAGTCTC CCCAGCAAAA TTCATCCCCC TGAACTCCGT GAGAAAATAT
  GATTGTCGTG TGCACAGAGG ACACTAAAGA GGCAAATGGG GGAGGCATTG TGTTGGAACT
  GTCTCTTCTG CTGTTCACTT GGCAAAGAGT GGGGTTAGTA TTTTTGGGAG GAGTTATTTT
  K
  TTGAGCAGTA ACCTAATATT TGATTTTATG TATCAATGAA GCCGATGTTA CCAAACTTTT
  AGTGTGAAAA ATTAATCTGT CTTCATTTAG AGTAAAGTGA TGTTTAAGAA TATTGCTACT
  TTGAAAAATG AAGTCTTTGT TTATCTTTAA AAGGTCACGT CATTTTTTTT TTGCATTTTC
  GACCCTTGAT TGCTACATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51275713	NES13782085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38253051					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51275713	NES13782085	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35287734 () rs orientation: forward

Symbol	Name	Function Class
Fam180a	family with sequence similarity 180, member A	1944 bp downstream
Gm67821	predicted gene, 67821	within coordinates