rs38253782 SNP Detail

Summary

• ID
  rs38253782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67062750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTT GACAACAGGA
  CTTGTGTAGT CCTGGTTGTC TTAGAGCTCT CTGTAAACCA GGCTGGCCTG GAACTCAGAG
  AGCCAACTGC CTTTAGTTTC CAAGTGCTGG GATTAAAGTC ATGCCCCTCC CCCAAGGCTC
  CTTCAAGGTT TTTTTTTTTT TATTCCAATA GGTTGAACCT GACAAAAAGC TATTGAATAT
  Y
  CTGGCAATCT CAGATAGAAA GATATTTGCT ATTATTGAGA AAAATATACT AAGAATTTAG
  GGATAGACCA AAAAGAGTAC AGGAAATCTT TTCAACGTCA CACAGGGCTT TGCTGAATAG
  GACCTCTCAG AAGGTGTGTG TGTGTGTGTG TGTGTGTATG TATGTATGTA TGTTTGATAT
  GTGTGAGAGG GAAGGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50729626	NES14251437	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38253782					SNP	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50729626	NES14251437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67062750 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	97 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	94 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	within coordinates
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	917 bp downstream
Gm68695	predicted gene, 68695	205 bp upstream
Rr681887	regulatory region 681887	1778 bp distal
Rr681888	regulatory region 681888	1343 bp distal
Rr681889	regulatory region 681889	1145 bp proximal
Rr681890	regulatory region 681890	1586 bp proximal
Tssr90326	transcription start site region 90326	237 bp upstream
Tssr90327	transcription start site region 90327	204 bp upstream