rs38256954 SNP Detail

Summary

• ID
  rs38256954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4263206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGCCATTC CAGAGACAGG CATCACCTTC CACGGCTGGC
  TGCCACCGCT ATCTACCCCT GGTGAGACTA CAGAGAAACA ACACAGCAAC TTATCAGATG
  R
  CTTAATTGGT GGAATGCTTC TACAAGCACC CAAGACTTGG GGACCAAATG ACTGTCCCCC
  AAGAAAAATC ACAGAATGGG GCTGCCTCCA AGCCCCAGAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585358	NES13654273	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38256954					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585358	NES13654273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4263206 () rs orientation: forward

Symbol	Name	Function Class
Clcf1	cardiotrophin-like cytokine factor 1	1273 bp upstream
Cpgi10392	CpG island 10392	1002 bp proximal
Gm45928	predicted gene, 45928	1205 bp upstream
Gm59210	predicted gene, 59210	within coordinates
Rr358111	regulatory region 358111	606 bp distal
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	1013 bp upstream
Tssr154300	transcription start site region 154300	1199 bp upstream
Tssr154301	transcription start site region 154301	1215 bp upstream
Tssr154302	transcription start site region 154302	1231 bp upstream
Tssr154303	transcription start site region 154303	1264 bp upstream