rs38257028 SNP Detail

Summary

• ID
  rs38257028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69274816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTGTAA TGATTCCCAT
  TCTGCAGAGG CGGGGACCTC CGTTGATCAG AAGCCAGCAC GCCCCCAACT TCCCCGCTCA
  GTTCGGCGTC AGCGCGCAGC TCCGCCCAGC CTGGAAGTAA CATTCGCACC CGGCGCCAGG
  ATCGCGGAAA CCCAGGTAGG CTCTGCAGCC TCAAATGCAC CGGAGAGACA TCGCCTCTTA
  Y
  GACAGAATGT TCTAGATAGG GCATTGCGGC GGGTCAGGTT ACCTCGAGAC TCACCTCCTG
  AGCAGCAAGC CCCGCAGCTT GAAAGCTGAG ACCGTGCGGC TCCGCAGCCG CTCCGGCGCC
  ATGTTCGCGA TTTGGCGCCA CCGCCGACGC CCCGCCCCCT CCTGGAATAG ACACACCCCT
  TGTCCCGCCC TTATATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51013769	NES14402723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	C		T
ss324083388	CHEV_12_70329029	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38257028					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013769	NES14402723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69274816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	within coordinates
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	within coordinates
Rr403319	regulatory region 403319	within coordinates
Rr467012	regulatory region 467012	106 bp distal
Rr467013	regulatory region 467013	127 bp proximal
Rr467014	regulatory region 467014	149 bp proximal
Rr467015	regulatory region 467015	1279 bp proximal
Rr467016	regulatory region 467016	1371 bp proximal
Tssr113624	transcription start site region 113624	590 bp upstream
Tssr116494	transcription start site region 116494	125 bp downstream