rs38258551 SNP Detail

Summary

• ID
  rs38258551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127724053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATGATTTT GGAAAGCCGT GCTGCTTTTG TACTTTGAAG
  AAAGTTGGGA GACAGAAGGT AGGGGCTGGA GAGGGAAGAG AGAGAGTACT CAGGTGATGT
  R
  CTGGGTTACT TCAGGGCCCC CAAGCCCCAT TAGGGATCTG GCCAGGGAGT ATAAAGGGGA
  GGCCCCCTTC AAACAGGGAG ACAAACCAGC AACACAGACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50945995	NES14148144	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38258551					SNP	A	G	G	G	A	G	A	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50945995	NES14148144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127724053 () rs orientation: forward

Symbol	Name	Function Class
Rdh7	retinol dehydrogenase 7	within coordinates
Rr226506	regulatory region 226506	909 bp distal
Rr226507	regulatory region 226507	339 bp proximal
Rr226508	regulatory region 226508	1349 bp proximal
Tssr99826	transcription start site region 99826	460 bp downstream
Tssr99827	transcription start site region 99827	504 bp downstream