rs38260301 SNP Detail

Summary

• ID
  rs38260301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8379061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGAAGA CCAAAATGAA
  TAAAACTAGA GATGAAATGG GAGACATTAT AATCATAGCA GTAAAAGTGC TATGTGGCCC
  AGAGGAACAT ACCTAGACTA GGTGTTATAA ATCAGGGTTT CTCCCAGCCT GCCCTCAGGG
  ACTCAGCACC AGCAGTTACA TCATCACCCA CCATTGCCAG GTCTAGCACA TGTCCACTGT
  Y
  GCAAGGTGCA TATTTCTCCT ATGCAACACG CACTTGCTCT CTGTCCCCCC CACTCTCTCG
  CTCTCTCTCT CTGTCCCTGT CTCTCTCTCA TGTGCCCACT CTGAGAAGAC CTTTCACTCT
  CTCCTCCCCC AATACCTGCA ATACATCTCT CAAGTGAGCT CTATCACCTG GTGTGATCTA
  TGCAGTATGC CTTGGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50812326	NES14197256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38260301					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50812326	NES14197256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8379061 () rs orientation: forward

Symbol	Name	Function Class
D10Mit76	DNA segment, Chr 10, Massachusetts Institute of Technology 76	331 bp proximal
Rr229094	regulatory region 229094	1341 bp proximal
Ust	uronyl-2-sulfotransferase	within coordinates