rs38262324 SNP Detail

Summary

• ID
  rs38262324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145534170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTTTTT CAAAAGTAAT
  TTGGGAAAGG CAAAACTCAT TAGCTCAACA ATAATTAGTT TTTCTTGCTA AAACATTGGA
  ATGTTTCTGT TAGGAAAATA TTATTGACTT TTCCCATTCC CAGTCCAGCG GAGGATGCCC
  AGATTTGATA ACAGAAAAGA GAATTATTCC GAGTTTTTGT TACTACCATG TTAGGACATA
  R
  ATCGCCTTCA AGGACAGCTT TTTAAAGCTG GGCAGTATGT GTATGGGGAG GAGGGTGCAT
  TCAACATGTG GTGTGTGAGT GTATGTGAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGCTTTG TGGTGTATGT GAGTGTCATG TGTATGTGAC ATGTGTGTGT GTGTTATGTG
  GTGTGTGTGA TATGTGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51669761	NES14637710	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38262324					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51669761	NES14637710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145534170 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddah1	dimethylarginine dimethylaminohydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr586849	regulatory region 586849			274 bp distal
Tssr32303	transcription start site region 32303			684 bp downstream