rs38263952 SNP Detail

Summary

• ID
  rs38263952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123799995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAAATA TACTTTCCAT
  TAGTCACAGC CAAGGCAGTG GCTCAGGCCT GTGATGCCAG AAACTGAGAG AGGAAAGTAA
  GAGGACAGCC ATAAGTTCTA GGCCAGCTGG GGCTACACAG TGAAACCCTG CTTCAAAAAG
  CCAAAAGGAG AAGCATGAAA GCCCCTTCCA AGATAAAGGT CACACTGCTC TACAGCCTTG
  Y
  TTTCCAAAAA ACACCAGTGT GTGCTGGTGT CGTCTGTCTG TCTATCTGTG TCATGTTGAG
  TCTGTGTGGA TATGAATATG TGTATGTGTG TCGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGCATAACC TGAATTTTGC ATTTATAACA CTGAATGATG CCTGATAGTC GTTTTTCTCA
  AGCCAAGAGC TATTTGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51811278	NES14717986	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38263952					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811278	NES14717986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123799995 () rs orientation: forward

Symbol	Name	Function Class
Clip1	CAP-GLY domain containing linker protein 1	within coordinates
Rr620238	regulatory region 620238	within coordinates
Rr620239	regulatory region 620239	1648 bp proximal
Tssr48802	transcription start site region 48802	293 bp upstream
Tssr53252	transcription start site region 53252	269 bp upstream
Tssr53253	transcription start site region 53253	242 bp upstream