rs38264394 SNP Detail

Summary

• ID
  rs38264394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6169262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCCTG CTCCTCACCC
  TTCCCCACCC CCCCCACCCC CCGCTAAAAT TGCCCCTCAT TCTATAACTA CTAGAGAGTG
  TTTTGAAGTG TCCTGGAGGC CACTGGGGGA AGTGCTGGAG TACACTGGGG GGTGGGGTCA
  AGTGGCTTTC TCCCTGCAAC TTAGAATCAT ATCAGTAGGT GTGTGTCCTG GAGTAGTTGA
  Y
  ACCAGGATGT GGGTGTCTCC TTCCAGGCTT TGAAAGCTGC AGGCTGTGCT CATCTTGGCA
  TTGTGGTGGG CGGTGGAGTC CAATGGCCTT TACTGGATAA TGTAATTCTT ATTTATTTTT
  TTATTTTAGT TAGGGGAGTA GGGATGACAC GTTTCAACAC TGTGGTTATT TTTGCAGCAG
  ACTGGCCATG TATAAATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50640631	NES14035636	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38264394					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640631	NES14035636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6169262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	349 bp distal
Pdgfd	platelet-derived growth factor, D polypeptide	within coordinates
Tssr2757	transcription start site region 2757	568 bp downstream
Tssr83664	transcription start site region 83664	802 bp downstream
Tssr83665	transcription start site region 83665	774 bp downstream
Tssr83666	transcription start site region 83666	695 bp downstream
Tssr83667	transcription start site region 83667	667 bp downstream
Tssr83668	transcription start site region 83668	645 bp downstream
Tssr83669	transcription start site region 83669	591 bp downstream