rs38267161 SNP Detail

Summary

• ID
  rs38267161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69620398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCACACG TCACATGCTA
  TGTTTGTAAG TGAACAGTAA TGGCTTCCCG TCACCTTTCT AAAATGGCTG ACTCATTTAA
  CTAACAGCAC TGTGAACCAG TGTTCTCAAC TTTTTCCTGC CTCAGCTGCC ATTCCTCCAT
  GATAGGGGAG GGACGTTGGC ATGAATTCTA TACGCTCAAA GGGATACCTG GATTACACAA
  Y
  GCAGCAGATA AAAGCAACTG GCATTGTGCA GGTTTCCCAG GTCCCCACCC GTATTTCCAC
  TTTTGCTGTA GTGATGTTTA CTGTTTGCCA GGTACTCCGG TGCACTGCGT AGAGCAAACA
  ACTTAAACTC CCATGGGAAC CTCTGCGGCC CATGATAAAA CCATCCTCTA TTTACATGAG
  GACAAGGCAC AGCGTTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51017777	NES14400719	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C		T	T	C		C
ss324085219	CHEV_12_70674611	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38267161					SNP	C	C	T	C	T	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017777	NES14400719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69620398 () rs orientation: forward

Symbol	Name	Function Class
Rr257072	regulatory region 257072	1998 bp distal
Rr257073	regulatory region 257073	198 bp distal
Rr257074	regulatory region 257074	1003 bp proximal
Rr403327	regulatory region 403327	920 bp upstream