rs38268297 SNP Detail

Summary

• ID
  rs38268297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58780822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTGAG CACATACATC
  ACTTATTGGA ATGCTCACAG TTCTCAGTGA CTCAGAGACC TGCAGTGGAA GAAGCGCTAA
  GAACAGAGAC CAACTGTTCT CAACTGTCAG AGAGAAGGGC TCTTAGACAT AGAATTTCAG
  GGCTAGATCC TCAGTAGGGC AGGTGCTTGG CCTCCCTGTA TGAGAGAGAC ACAGGAAGGA
  R
  TGAGAAAAAT GAGAACCACC CTTGTGGGAG ACTTGGGGAA GCCCAACTTG GGAAGGACAA
  AGCCCCAACT TCTGCACTGC TTGTCTGTCC TCAATCACTA TGTGTGTTCT TACCTACAAA
  CCACTCAGTG GGTGTTAAAT GCTTCTGGTA TGCCTAGCAG GTCCTGAAAG ATCTGGCCTA
  AGTGATTTCT CCTCAATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50903103	NES13490929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38268297					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903103	NES13490929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58780822 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	1815 bp downstream
Gm56672	predicted gene, 56672	within coordinates
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	404 bp downstream
Tssr159975	transcription start site region 159975	427 bp downstream
Tssr159976	transcription start site region 159976	878 bp downstream
Tssr159977	transcription start site region 159977	887 bp downstream
Tssr159978	transcription start site region 159978	910 bp downstream