rs38270050 SNP Detail

Summary

• ID
  rs38270050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65736319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGAGAG AGAGAGAGAG
  GGAGAGAGAG AGAGAGGCAC AGGCACAGAA GCAGACGGTG ATCTCTGAGT CTGAGGCCAG
  CCTGGTCTAC AGAGTGAGTT TCAGGACAGC CAGAGATGGT ACAAAGTAAG AGTCTGCCAC
  CAAATCAACC AACCAACCAA CCAGAGAGAT AGACAGACAA AAAGAGTCTG CATACCCCAG
  Y
  CTCTTGCCTA ATTTCTGAAA ACAATACAGC CTCAGCCGTG ATGCTCCTCA CACAGGATGG
  AATTCTCCAC TAATGTGTCT GCTGTGTCAT GTCCACATGT CACCTTCGTG TGCTGGCACA
  CTCCATTCCT CAAATAACAA TTTCCTAAAC TTTCCAGTGT TCTCTTTCCA TATTTTACCC
  TATAATTGAA GAAATTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50963772	NES13941869	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38270050					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50963772	NES13941869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65736319 () rs orientation: forward

Symbol	Name	Function Class
Gm37359	predicted gene, 37359	218 bp downstream
Lekr1	leucine, glutamate and lysine rich 1	Intron
Rr577737	regulatory region 577737	614 bp distal
Rr577738	regulatory region 577738	354 bp proximal