rs38271491 SNP Detail

Summary

• ID
  rs38271491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27749825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCTCC CTCGGCTGTC
  AACTTGGGAT CCTCCTAGGG CTTCAGCCTC CTCACGGTCG GGATTATAGG CATTTCCTAC
  CATATGGAGA TTGATTGACA CAGACACTGT AACCGATTGG ACATGCATTT TCCCTTCCCT
  CCCTAGTGAC TACCAGACAA AGTGCTGGAG TGGAACCCAG TCCAAGTACT ATGCGGATCT
  Y
  TGACCGGTTA ACTCTAATCC TCCCAGCCCA CAGTACGCAG AGCTTCGATC CTGCCCATTC
  CTCATCAGAT TTATATTCGG TTCCTAGCTG GCTGGCTAGG TCCCTCTTAC TCTTCCACTA
  CTCCTTCCAA GTCCAGGAAT GTGCGCTGTG CAGCCGCTGC TCTGACTCCT AAAAACTGTA
  AAACTGTAAA AGCTGTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51947122	NES14964414	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38271491					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947122	NES14964414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27749825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	141 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	530 bp upstream
Rr186444	regulatory region 186444	within coordinates
Tssr76776	transcription start site region 76776	524 bp upstream
Tssr76777	transcription start site region 76777	535 bp upstream
Tssr76778	transcription start site region 76778	598 bp upstream
Tssr76779	transcription start site region 76779	632 bp upstream
Tssr76780	transcription start site region 76780	700 bp upstream
Tssr76781	transcription start site region 76781	1626 bp upstream