rs38272357 SNP Detail

Summary

• ID
  rs38272357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTAAAA AATCAGACTT
  AGAACGAGTA TTTCCTTTCT CCTCCCATTG CAGGAAGATT TAACTACGAG CTTCTTGAAC
  GCGGTCAATT TGATTCTTTC TTCATTTTTA AGCATACACG GAGTGTGTGA GACAAAGTTG
  TCAAAACTTT CACCCCTGCA CAACTCAGTT TAAATCCTGG GACTAAAAGT GTAAAAACCA
  R
  AGGACAAATG ACTTTGCATA GACATACTAA TCAAAACCCA AAGCAGTGGA GGTAGCTCCC
  AGGAGACCAG GAATGGCTCC TCTACATCTT CGGAAGTAAT TTTCCATGTG CCTGGCAGGG
  CGATCTTGTT AAAGCACAGC CTCAGGTTGC CCAAGCTGGG CTTGGACTCC GTCGGGTTTA
  CAAGCTTCAT TACTGGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52036452	NES15053654	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38272357					SNP	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036452	NES15053654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423653 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	257 bp proximal
Gm37545	predicted gene, 37545	1517 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	623 bp upstream
Rr684632	regulatory region 684632	133 bp proximal
Rr684633	regulatory region 684633	1318 bp proximal
Rr684634	regulatory region 684634	1445 bp proximal
Tssr86520	transcription start site region 86520	655 bp upstream
Tssr86521	transcription start site region 86521	830 bp upstream