rs38272582 SNP Detail

Summary

• ID
  rs38272582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60989402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCCTC CAGGAGCCAG
  AGCTGGCTCT GGCTGTGAGC AGCTGGGCTC AGGGTAGGCA GAAAGCAAAG CCAAGGGCAG
  CCATACTGGG GGAAAGCCAT CATTCCTTAG GGGGATGGCC TGGGTTGGCG GGAGGGGAAA
  ACCAAGGAGC AAGCCCCCAT ACCTACAACA CCTACAACGA AGATCCCATA TTCATCATAC
  R
  GCCAGGTAAC CAGCACCCTT CTCTGTTCAA GCTGCTAGGA AGCCTAGCCT CAGAATATCC
  CAAATGCAGC CTCCGCCTAC TCTCTCCTGG CTCATTGAGA TCAGAAGGAT GAATTGGCTT
  GCCATCCAGC TATGTCAAGC TACATGAAGG TAAGAATTTG CTTCTGATAA TTTTCACTTC
  TCATATCTAC TCATAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52025169	NES15041757	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38272582					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025169	NES15041757	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60989402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21877	CpG island 21877	237 bp distal
Gm34004	predicted gene, 34004	within coordinates
Rr204410	regulatory region 204410	563 bp proximal
Rr209953	regulatory region 209953	within coordinates