rs38273784 SNP Detail

Summary

• ID
  rs38273784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121316994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGCCAAC AGCCCTAGAG
  TCCTTGCATT AATATGGCCC CACAGGGGCA TTTTGAATCA GGAGTCTTGT GAGGACAGCT
  GAACTATTAA TAGGCATTAT AATCAGGGTG ACTCTGGCAG GGTGCCAGCA GACCAGGGTA
  GCTCCTGGGG AGGAATAGGT CACCTACAAC TGGTAAGGAC AAGAGGGGCT GGATCTGAGT
  K
  TGAAACCCTC ACCACTGGGC GCTGAGGTGA GGTGTAATCT TAGTATTCCA TAGGTGGAAG
  CAAGAAGGAT CACCAGCTAG GGACAGCCTG AGTCACTCAG CATTTCCTAT CTCAAAAATA
  AAGATATGCA AGGATAGGGG CGTACTCTAA TAGAGGGGTT ACCCCCTGTC TTAGTCAGGG
  TTTCTATTCC TGCACAAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51983392	NES14995606	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38273784					SNP	G	G	G	G	G	G	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983392	NES14995606	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121316994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	582 bp distal
Gins2	GINS complex subunit 2	1180 bp upstream
Gm10614	predicted gene 10614	within coordinates
Rr401181	regulatory region 401181	1017 bp downstream
Rr671590	regulatory region 671590	730 bp distal
Rr671591	regulatory region 671591	718 bp distal
Rr671592	regulatory region 671592	within coordinates
Rr671593	regulatory region 671593	1465 bp proximal
Tssr83202	transcription start site region 83202	1205 bp upstream
Tssr83203	transcription start site region 83203	1187 bp upstream
Tssr83204	transcription start site region 83204	1175 bp upstream
Tssr83205	transcription start site region 83205	1165 bp upstream