rs38277645 SNP Detail

Summary

• ID
  rs38277645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTATCC CTACAGCACC
  TCCTTGAGAA CTCAGAAGTG AGGACACTCA CCGGTGTGTG TGGGTGGCTG GATGGGTGTT
  GTGGAGAGCT CGAGCCGTCG CCGTAAATGA AGAGGCATTA GTCCCCAAAC CTACTCTTTT
  CTGTCCTTTG CAGCTTAGGA GTTAATCCTG GTAACATGTT CTTAAATGTC AAGCTGCCAG
  R
  AACATCCCTG CAGAGGCTCA CTGGTTTTGC TACAATGTAG CCAGAAGCAT TAGTCTGATG
  AATTCATCTA TCACTTCAGG CAGTCTCAAA GTTCACCACT CACTGTGCTG AAAGACTTTA
  TATAAATCAT ACCTGTCCCA TTGACCCTGC TTAGAATGAA CTCGGCACCT GCCAGTCTTC
  TTCTGTCCGA GACACTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413758	NES13453167	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38277645					SNP	A	A	A	A	A	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413758	NES13453167	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327961 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	762 bp distal
Rr356345	regulatory region 356345	within coordinates
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	1965 bp downstream
Tssr153542	transcription start site region 153542	1309 bp downstream
Tssr153543	transcription start site region 153543	1475 bp downstream
Tssr153544	transcription start site region 153544	1657 bp downstream