rs38277724 SNP Detail

Summary

• ID
  rs38277724
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92030073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG ATACAAACAA ACACAGGATG
  M
  TATTAAGTTT GTAGGTTATG TTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50605927	NES14042911	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	A	A	C	C	A		C	C		C
ss145568202	ENSMUSSNP1251634	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					C
ss322790899	CHEV_8_93827344	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38277724					SNP	C	C	A	C	C	A	A	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605927	NES14042911	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92030073 () rs orientation: forward

Symbol	Name	Function Class
Rpgrip1l	Rpgrip1-like	within coordinates
Rr382458	regulatory region 382458	185 bp upstream
Rr406224	regulatory region 406224	1612 bp proximal
Rr407238	regulatory region 407238	1614 bp proximal
Rr667510	regulatory region 667510	1496 bp proximal