rs38278194 SNP Detail

Summary

• ID
  rs38278194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69761382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCAGTGAG ATACTGTAGA TCGGACTAAG
  GCTTCCCATC TTTAAAAGCA ATCTTCAGTT Tgctgtcaaa agcatctttc ttaaatatga
  atctagttgt accattcttc tacataagac atttcaacaa cttctcactc cgacagcaga
  R
  ctgaaactcc ttgttctgac tcccgagcca tttcatgagc tgCCTGAATT CTACGAGTCA
  ACGAATTTAG TGGCAAAAGT CAGAGTTCTG AGGCTGGATA ATTAAATTTA AACCTTAGCC
  GTCTGCTTGT TCATCCACTT GTTAAAATAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51261996	NES14268155	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G		A	G	G	A		G
ss319782004	CHEV_1_69768797	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38278194					SNP	G	G	A	G	G	G	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261996	NES14268155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69761382 () rs orientation: forward

Symbol	Name	Function Class
Gm70550	predicted gene, 70550	within coordinates
Rr371466	regulatory region 371466	1470 bp upstream