rs38280775 SNP Detail

Summary

• ID
  rs38280775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60959995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGAAGA AGGCCATGGG
  TCGGGTCACT CCCCAGCACC ACAGACACCT ATGTTTATGG AGTGGAATTA AGCCAGCATG
  GCAGCATTTG AAAATGGCCT ACCAGGGTAT GGGGAGGCCA GTGCAATCTT CCAGAGGGCC
  TCTGGGTAGG GGAAGGGGGT TCTCTACCAG GGGTCGTGAG TCAGTCCCTC TTTCCATGCT
  R
  TGCCGGCCTC AAGTCTGAGC TTTGCTTTTC CACAGGAATG CACAAGTGAG GCCCCAAGGG
  TCACAGCTGT CACAGCCTCT GATGCTGCTC ATCGCGGCTT TGTCGCCTGA CCGGAGGACC
  TCAAGAGCGC GCTCCTTACA TGCACCTGTG CGTGGTTTTG ACAGCTGTGG AAGGCGCATC
  TCCTTTCGAC CCAACCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52025276	NES15042134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38280775					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025276	NES15042134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60959995 () rs orientation: forward

Symbol	Name	Function Class
Gm33699	predicted gene, 33699	within coordinates
Gm39348	predicted gene, 39348	within coordinates
Rr401422	regulatory region 401422	1635 bp upstream
Rr680430	regulatory region 680430	within coordinates
Rr680431	regulatory region 680431	1275 bp proximal
Tssr85498	transcription start site region 85498	1924 bp upstream