rs38283302 SNP Detail

Summary

• ID
  rs38283302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGGTGC ATCTCACTCT
  CTAGAGAATG TGCTATCAGC AGGTGTTCAG TCAGTCGTTT GCTGATCAGA AGACCTTGGC
  TCTGGTCCAG TCTGGTAGCA CTGATGTCAG AGGTTCTCAC GGGGCTCTCC AGAGCCTCTT
  AGGAGACCTT TTCTTTCTGG GTGGAGGGAA ACTTAAGTCG GGGCTCTTTA GGAAGAGATG
  R
  CCTTTGAGAT CTACTTTGAG GTCCAAGCAC TTACGACCTG GATGAAAATC TTGCCCGTGA
  AGACCCCTGA GTTATTAACT TGCTAACCCC ATACAGAATC GGGCAGGAAG TGGTGCTAAT
  GCCTGACTTT GATATTGGTC TCCTGATCAG GTACATTAAA AAAATAAGCC TTTCTATACT
  ATAGGCCTGG TACAGCGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51221538	NES14297430	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38283302					SNP	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221538	NES14297430	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239256 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	1042 bp upstream
Rr363563	regulatory region 363563	944 bp proximal
Tssr5558	transcription start site region 5558	1010 bp upstream
Tssr157068	transcription start site region 157068	1074 bp upstream
Tssr157069	transcription start site region 157069	1101 bp upstream
Tssr157070	transcription start site region 157070	1128 bp upstream