rs38283794 SNP Detail

Summary

• ID
  rs38283794
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47955392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCATAT CAGTAATTGG
  TGTCCGGTCA ATATTCATTG ATTAGAGGAT AAATAGGATT CTAATTCTTG TCTTAATATA
  GCAAAATTTA TCTCAGTCCA TCAAATACTT TTTCCACAGG GAAGTAAAAC ACTATGCCCT
  CTGCTAGCTT TGGTGCTTCA TATTCTTCTT TTGCAAACAA TTCCATTACT GAAATGTGAA
  W
  TTTCTATTCT ATTTGTTTTC CATATATGCT CCTTTTGATT TTCTTCTGTA TTTTTTCATT
  ATTGGTTTAG TAACATTTAT TATATTATAA AATCTGTATA TCTAAAAATC TTACTTTATA
  TTTCAACTTT TTAACATTTT CAAGTAAGAG CTCCTAATGA TTGAGTACAC TGCGATTATT
  TTTGAGGACT AGTGACACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss51246468	NES14286114	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs38283794					SNP	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246468	NES14286114	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47955392 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	396 bp upstream
Rr371240	regulatory region 371240	533 bp downstream
Tssr6618	transcription start site region 6618	1205 bp upstream