rs38285019 SNP Detail

Summary

• ID
  rs38285019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGCCAC AATTTGGAGT
  AGGAGCTGAG ATTTGTGCCA GAATTATGGA AGGCCCTGCA TTCAACTTCC TTGATGCCCC
  TGCCGTTCCT GTCACTGGTG CTGATGTCCC TATGCCTTAC GCAAAGGTCC TAGAAGACAA
  CTCCGTACCT CAGGTCAAAG ACATCATATT TGCAGTAAGG AAGACTTTGA ACATCTAATT
  Y
  GGACTTTGAA TGTAAAGTCA TTGAAATCTA TTTAAAATCC TTGGTGGGAC TTCACCTGAT
  GTGTACTGCG AGACTGCTAG TCATAAAGTT AACGCTGAAG TGACAGCAGG TGTCTGAACT
  GTAAGAAGTT TCAATGTGCT TATGAGTGGA ATGTTTTCCA CTCCCTACCC TAGATACTCT
  GCTTTCTTTG TCTGTTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50908878	NES13484783	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38285019					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908878	NES13484783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842425 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	3 bp downstream
Mrpl15	mitochondrial ribosomal protein L15	1007 bp downstream
Rr407423	regulatory region 407423	1872 bp distal
Tssr5799	transcription start site region 5799	1080 bp downstream