rs38285915 SNP Detail

Summary

• ID
  rs38285915
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19277392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACCTA GCAGTTAAAG
  ATTTAAAAAA GAGGGATGTA AATTATCTTG TTAATAAGTT TGTGCCTGGG GAATTTTAAT
  TTCCAAATCT ATAACGTCTA TCTTTCAAAT TATCAAGTAG AGGATGACTT AGTGAAAGAG
  TGTGGAATCC ACTTTAAGTC CTTCCACACA ACGACATTAA GAGGAACGAT TTCCTGTCTC
  S
  CAACCATCTC TGGTGGCGAA AGGGAGACAT ATCTGCTGAC GCTGGAAGAC TAGCCTTGTT
  CTGTGTAGTT TAAGAATATT TTCTTTTTAG TAGAGGGAAG AGGGGAAGGA AAGAAGAAGG
  AAGGGGGAAG GAAGGAAAGA CTAGAAGGAG AAGATCTAAA GAGAAAGAAG GAAAGAAGGG
  AGGGAGGGAG GGAGAAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916996	NES13479923	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38285915					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916996	NES13479923	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19277392 () rs orientation: forward

Symbol	Name	Function Class
Rr408233	regulatory region 408233	1013 bp distal
Rr408234	regulatory region 408234	1394 bp distal
Rr408235	regulatory region 408235	644 bp distal
Rr408236	regulatory region 408236	774 bp distal
Rr408237	regulatory region 408237	340 bp proximal
Rr408238	regulatory region 408238	1585 bp proximal
Rr408239	regulatory region 408239	1803 bp proximal
Tfap2b	transcription factor AP-2 beta	1746 bp upstream
Tssr6030	transcription start site region 6030	1772 bp upstream
Tssr6031	transcription start site region 6031	1815 bp upstream
Tssr6032	transcription start site region 6032	1830 bp upstream
Tssr6033	transcription start site region 6033	1846 bp upstream
Tssr6034	transcription start site region 6034	1870 bp upstream
Tssr6035	transcription start site region 6035	1902 bp upstream
Tssr6036	transcription start site region 6036	1926 bp upstream
Tssr6037	transcription start site region 6037	1944 bp upstream
Tssr6038	transcription start site region 6038	1972 bp upstream
Tssr6039	transcription start site region 6039	1987 bp upstream