rs38288555 SNP Detail

Summary

• ID
  rs38288555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47450646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGC ACAGAGGGTA AGCCTTTAAA
  R
  AGATCAAACA GTAGCCTGAC CTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50859932	NES13511526	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38288555					SNP	A	A	G	A	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859932	NES13511526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47450646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	1192 bp proximal
Rr549061	regulatory region 549061	1263 bp distal
Rr549062	regulatory region 549062	1353 bp distal
Rr549063	regulatory region 549063	274 bp distal
Rr549064	regulatory region 549064	156 bp distal
Rr549065	regulatory region 549065	960 bp proximal
Rr549066	regulatory region 549066	1945 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1584 bp upstream
Tssr159730	transcription start site region 159730	1440 bp upstream
Tssr159731	transcription start site region 159731	1887 bp downstream
Tssr159732	transcription start site region 159732	1908 bp downstream