rs38290618 SNP Detail

Summary

• ID
  rs38290618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAGCCAC ATGTTTACAC TTTTGTTTCA TTCATTTTTA
  GTGTGTTGTG GGAGCACAAT GCTCATGTGG GTATGCAAGT GTATGGAGTC TTCCTGGATT
  R
  CTATACATTC TATTTTTTTT GAAGCACCAT CTTTCTGAGT TCCAAGGACC TGCCTGTCTC
  TGCCTCTCTA GTGCCACGAT TACAGGCATT CATATTTTAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904021	NES13492699	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs38290618					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904021	NES13492699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	1447 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	49 bp proximal
Tssr5571	transcription start site region 5571	1393 bp downstream
Tssr157266	transcription start site region 157266	1435 bp downstream
Tssr157267	transcription start site region 157267	1416 bp downstream
Tssr157268	transcription start site region 157268	1362 bp downstream
Tssr157269	transcription start site region 157269	769 bp downstream
Tssr157270	transcription start site region 157270	695 bp downstream
Tssr157271	transcription start site region 157271	536 bp upstream
Tssr157272	transcription start site region 157272	547 bp upstream
Tssr157273	transcription start site region 157273	1678 bp upstream
Tssr157274	transcription start site region 157274	1710 bp upstream
Tssr157275	transcription start site region 157275	1730 bp upstream
Tssr157276	transcription start site region 157276	1753 bp upstream
Tssr157277	transcription start site region 157277	1994 bp upstream
Tssr159959	transcription start site region 159959	1383 bp upstream
Tssr159960	transcription start site region 159960	1335 bp upstream
Tssr159961	transcription start site region 159961	628 bp downstream