rs38290770 SNP Detail

Summary

• ID
  rs38290770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162162861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGCAGA AAACGTGTGT
  GCAGTTCTCT GGGGCTCCAT CCCTGAGCCC TTACACTCAC GTTTTCACCT GCATGCCCTG
  TTGGCAGTTC TCCCTCGCAC AACCATATCC TATATGGGTT AAAACCTGGA ATTCCTGTGC
  TCTTTACAGA AATGCACTGT TATTCTCCCC TCTTATCCAG AACCCCAAGC CTGAAACACT
  Y
  CATTTCCCTA AAACTTACGG GTCTTACTTT GTTTTAATAC CCTCCTTCCT TCCACGGTCC
  ACCTCTCAAA CTACTCTTAG GATATCCTAG AACAGTTCCA TATAGTTCTA GGATGTATAA
  ACTCTCCACC TCCCTCTCTT CCACCCCTCA ACCCCACTGC TAAATGTATC ATCTTTCCAG
  ATACGTACAG TAAGGATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss51399134	NES14460671	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs38290770					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51399134	NES14460671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162162861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnm3	dynamin 3			Intron
				Noncoding-Transcript-Variant
Rr421955	regulatory region 421955			297 bp distal
Rr421956	regulatory region 421956			1083 bp proximal
Rr421957	regulatory region 421957			1279 bp proximal
Rr421958	regulatory region 421958			1523 bp proximal