rs38291562 SNP Detail

Summary

• ID
  rs38291562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21465287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGAGCC AGGAGCAGGG
  AGGTCACTGA TTGCTTCGTA AGCAAAATCT GCTTCTTGTT ATCAGAGAGC CATAGTTCTC
  CTGAGACTGG TGATCAGCAT GAGACGTGCA TTTGCCTCCT TTCTGGCCCT GCTATGCTTT
  GTTCTTGCAG ATGATTGGCC CGAATGCCTG GTCAGGTACA GGCATCTCTC TGCATTACCA
  K
  GACTCATAAG TGAAACCAAG TATGGGTCAC CTCAGTTAGG TACAGAGATC TTTTGTAATG
  GAGTCAGGGA CGTGAAAATT GAGGTAACTA AGAATTGTTA CTACCAAGAG TCAGAGCACC
  CTCAGTGGGC TGGGAATCTC TCTGAGGCTC TGGATGCTGT AGCAGTATTC ACCTGACTGG
  CTTGGAAGTC CTCAGAATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50694691	NES13605171	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		G	T	T		G
ss325751695	CHEV_19_21562413	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38291562					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694691	NES13605171	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21465287 () rs orientation: forward

Symbol	Name	Function Class
2010105D22Rik	RIKEN cDNA 2010105D22 gene	9 bp upstream
Gm59126	predicted gene, 59126	within coordinates
Rr361557	regulatory region 361557	170 bp proximal