rs38295205 SNP Detail

Summary

• ID
  rs38295205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTCTT AACCCTGATC
  CCTTGGTTTC CGAGAGTTGC TCAGCAGTGT TTGTGGCGCG AAGATTCCCA CCGCCGACCC
  CTGTCATGAT TAAAGGAGGC TGGCTGTAGG ATTCAACACG GGAAAGCCAG TCGTGGAAGG
  GAGAGGGGGC TGTCTCGACC ACTGGCCTCC GGGTCGATAG AGAACTTTTC TTTTTTGTCA
  R
  TTGCCAGGGG CCAACTGCGG AGCCTTTGCC CTTCTCGAGA GTTCATCCTT TGACATACAT
  GGACAGCAGG TTGTGTGAGA GTAGTTTTAT TCATAAGCAT GCCGCCAGCA TTCATTCAAT
  GACGTTAGAA AAAAAGAGAG AAATAAAATA AAATAAAAAG GAGAAACGGG AAGTAAACTA
  GTGTTTGTCA TGCTCCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51516764	NES14634622	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A		A	A	A		A
ss324646620	CHEV_14_60060289	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38295205					SNP	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516764	NES14634622	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678901 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	121 bp distal
Gm45935	predicted gene, 45935	572 bp upstream
Rr404137	regulatory region 404137	394 bp downstream
Rr493049	regulatory region 493049	588 bp distal
Rr493050	regulatory region 493050	461 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	572 bp upstream
Tssr125903	transcription start site region 125903	870 bp downstream
Tssr125904	transcription start site region 125904	456 bp downstream
Tssr129008	transcription start site region 129008	565 bp upstream
Tssr129009	transcription start site region 129009	355 bp upstream
Tssr129010	transcription start site region 129010	344 bp upstream
Tssr129011	transcription start site region 129011	145 bp upstream
Tssr129012	transcription start site region 129012	142 bp upstream
Tssr129013	transcription start site region 129013	135 bp upstream