rs38296224 SNP Detail

Summary

• ID
  rs38296224
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:26758641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCTTC AACTTCCCTT
  GATGAGGGTC TTGGTGACCA CAGCTGAAAA CATAGAATGC CCACCACAGG AGAACTTCCA
  AAGGCTTGCT CCTTCACTCA GAGGCAAATT CCTACTTCAG ATTGTCAGTA AAATTTCAGG
  AGGCAGCTTT GGGTTTGGTT TTGAATTAGG CCAACCCTGG AGCAATTTAT TTCAAATCTG
  S
  TAGGAATGAA ACCGCTGTGT AGGAGTGTGC AGACTGTAGC TAAGAGTGGT CTAGGATAAA
  GTTGGGCTGA CCACGTTTTT GGCACAGTGA GTCTCCAACA CAGAAAGGGG AGGAATATCC
  TTTTCTCACA TGTGAAGTGC ATGCTTCAAT GACAAGCCCA TGAGAATGAG CTCTGTAAGG
  GAACCTGAAA GATCCATTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50831484	NES14195946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38296224					SNP	C	C	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50831484	NES14195946	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:26758641 () rs orientation: forward

Symbol	Name	Function Class
Arhgap18	Rho GTPase activating protein 18	within coordinates
Tssr92804	transcription start site region 92804	1911 bp downstream
Tssr92805	transcription start site region 92805	1432 bp downstream